Here is a list of all class members with links to the classes they belong to:

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object_end() : vg::ProblemDumpExplainer
object_start() : vg::ProblemDumpExplainer
occs : vg::MinimizerMapper::Minimizer
of_node() : vg::Paths
off_reference_pos_search_limit : vg::Surjector
offset : vg::algorithms::GFAzParser::PendingRGFAVisit, vg::GaplessExtension, vg::Haplotypes::TopLevelChain, vg::PathBranch, vg::position_t, vg::Primer, vg::VectorView< Item >::const_iterator, vg::ZipCode::decoder_t
OK : vg::AlignmentValidity
ok : vg::GAFSorterFile, vg::WFAAlignment
old_node : haplo::hDP_gbwt_graph_accessor< GBWTType >
old_score : vg::GaplessExtension
on_header() : vg::algorithms::GFAzParser
on_link() : vg::algorithms::GFAzParser
on_path() : vg::algorithms::GFAzParser
on_path_edit() : vg::FeatureSet
on_segment() : vg::algorithms::GFAzParser
on_walk() : vg::algorithms::GFAzParser
only_correctly_mapped : vg::ReadFilter< Read >
only_first_alignment : vg::ReadFilter< Read >
only_mapped : vg::ReadFilter< Read >
only_proper_pairs : vg::ReadFilter< Read >
open_all() : vg::StreamSorter< Message >
open_chain() : vg::ZipCodeForest
open_chains : vg::ZipCodeForest::forest_growing_state_t
open_input() : vg::GAFSorterFile
open_intervals : vg::ZipCodeForest::forest_growing_state_t
open_output() : vg::GAFSorterFile
open_snarl() : vg::ZipCodeForest
OperatingMode : HaplotypesConfig
operator bool() : vg::AlignmentValidity, vg::Explainer, vg::WFAAlignment
operator Number() : vg::Range< Number >
operator Value &() : vg::BaseOption< Value, Parser >
operator!=() : vg::algorithms::TracedScore, vg::BitString, vg::ChainIterator, vg::edit_t, vg::GaplessExtension, vg::IncrementIter, vg::MinimizerMapper::alignment_index_t, vg::MinimizerMapper::read_alignment_index_t, vg::NodeSide, vg::NodeTraversal, vg::path_mapping_t, vg::path_t, vg::PhasedGenome::iterator, vg::position_t, vg::ShuffledPairs::iterator, vg::VectorView< Item >::const_iterator, vg::ZipCodeTree::distance_iterator, vg::ZipCodeTree::oriented_seed_t, vg::ZipCodeTree::seed_iterator, vg::ZipCodeTree::seed_result_t
operator&=() : vg::SmallBitset
operator()() : std::hash< const vg::Snarl >, std::hash< pair< A, B > >, std::hash< std::tuple< TT... > >, std::hash< vg::NodeSide >, std::hash< vg::NodeTraversal >, std::hash< vg::ZipCodeTree::oriented_seed_t >, std::hash< vg::ZipCodeTree::seed_result_t >, vg::BBEdgeHash, vg::discrete_distribution< T >, vg::DistanceHeuristic, vg::IncrementalSubgraph::FCmp, vg::IncrementalSubgraph::IterFCmp, vg::LazyRNG, vg::MappingHash, vg::MEMClusterer::DPScoreComparator, vg::NestedCachedPackedTraversalSupportFinder::snarl_less, vg::normal_distribution< T >, vg::ReadMasker, vg::SnarlMinDistance, vg::state_hash, vg::subcommand::Subcommand, vg::TipAnchoredMaxDistance, vg::truncated_normal_distribution< T >, vg::uniform_int_distribution< T >, vg::uniform_real_distribution< T >, vg::wang_hash< handle_t >, vg::wang_hash< handlegraph::net_handle_t >, vg::wang_hash< net_identifier_t >, vg::wang_hash< NodeSide >, vg::wang_hash< NodeTraversal >, vg::wang_hash< path_handle_t >, vg::wang_hash< std::pair< A, B > >, vg::wang_hash< T * >, vg::wang_hash< T, typename std::enable_if< std::is_integral< T >::value >::type >, vg::WideningPRNG< PRNG, OutType >
operator*() : vg::ChainIterator, vg::count_back_inserter< T >, vg::IncrementIter, vg::PhasedGenome::iterator, vg::ShuffledPairs::iterator, vg::VectorView< Item >::const_iterator, vg::ZipCodeTree::distance_iterator, vg::ZipCodeTree::seed_iterator
operator+() : vg::VectorView< Item >::const_iterator
operator++() : vg::ChainIterator, vg::count_back_inserter< T >, vg::IncrementIter, vg::PhasedGenome::iterator, vg::ShuffledPairs::iterator, vg::VectorView< Item >::const_iterator, vg::ZipCodeTree::distance_iterator, vg::ZipCodeTree::seed_iterator
operator+=() : vg::Counts, vg::MinimizerMapper::aligner_stats_t, vg::MinimizerMapper::aligner_stats_t::stat_collection_t, vg::MinimizerMapper::aligner_stats_t::stat_set_t, vg::VectorView< Item >::const_iterator
operator-() : vg::algorithms::TracedScore, vg::VectorView< Item >::const_iterator
operator--() : vg::VectorView< Item >::const_iterator
operator-=() : vg::VectorView< Item >::const_iterator
operator->() : vg::ChainIterator, vg::VectorView< Item >::const_iterator
operator<() : job_type, vg::algorithms::TracedScore, vg::FragmentedHaplotypeVisit, vg::GAFSorterRecord, vg::GaplessExtension, vg::MatchPos, vg::MaximalExactMatch, vg::MinimizerMapper::Minimizer, vg::NodeSide, vg::NodeTraversal, vg::WFAPoint
operator<<() : vg::cerrWrapper, vg::MaximalExactMatch
operator=() : vg::algorithms::Anchor, vg::Aligner, vg::AlignmentChainModelVertex, vg::BaseOption< Value, Parser >, vg::BitString, vg::connection_t, vg::count_back_inserter< T >, vg::edit_t, vg::GAFSorterFile, vg::GSSWAligner, vg::HTSAlignmentEmitter, vg::HTSWriter, vg::IncrementIter, vg::IndexRegistry, vg::IndirectVectorView< Item >, vg::Masker, vg::MatrixAlignmentScorer, vg::MaximalExactMatch, vg::MEMChainModelVertex, vg::multipath_alignment_t, vg::ParallelKFFReader, vg::path_mapping_t, vg::path_t, vg::Paths, vg::PhasedGenome::iterator, vg::PhasedGenome, vg::position_t, vg::QualAdjAligner, vg::QualAdjXdropAligner, vg::Range< Number >, vg::SmallBitset, vg::SnarlDistanceIndexClusterer::Seed, vg::SnarlManager, vg::SnarlManager::SnarlRecord, vg::StreamIndexBase, vg::subcommand::BaseValuation, vg::subcommand::GroupedOptionGroup, vg::subcommand::Preset, vg::subcommand::TickChainLink, vg::subcommand::Valuation< T >, vg::subpath_t, vg::VcfBuffer, vg::VectorView< Item >, vg::VG, vg::Watchdog, vg::WindowedVcfBuffer, vg::XdropAligner, vg::ZipCodeTree::distance_iterator::iteration_position, vg::ZipCodeTree::distance_iterator, vg::ZipCodeTree::seed_iterator, vg::zstd_compress_buf, vg::zstd_decompress_buf, vg::zstd_ifstream, vg::zstd_ofstream
operator==() : vg::algorithms::TracedScore, vg::BitString, vg::ChainIterator, vg::edit_t, vg::GaplessExtension, vg::IncrementIter, vg::MaximalExactMatch, vg::MinimizerMapper::alignment_index_t, vg::MinimizerMapper::read_alignment_index_t, vg::NodeSide, vg::NodeTraversal, vg::path_mapping_t, vg::path_t, vg::PhasedGenome::iterator, vg::position_t, vg::ShuffledPairs::iterator, vg::varint_vector_t, vg::VectorView< Item >::const_iterator, vg::ZipCode::decoder_t, vg::ZipCode, vg::ZipCodeTree::distance_iterator, vg::ZipCodeTree::oriented_seed_t, vg::ZipCodeTree::seed_iterator, vg::ZipCodeTree::seed_result_t
operator>() : vg::algorithms::TracedScore
operator[]() : haplo::gbwt_thread_t, vg::IndirectVectorView< Item >, vg::VectorView< Item >, vg::VectorViewInverse
operator|=() : vg::SmallBitset
optimal_score_on_genome() : vg::PhasedGenome
optimize() : vg::VG
Option() : vg::Option< Value, Parser >, vg::Option< vector< Item >, Parser >
option : vg::subcommand::BaseArgSpec< Receiver >, vg::subcommand::BaseValuation
option_id : vg::subcommand::BaseArgSpec< Receiver >
option_offsets : vg::Configurable
option_to_index : vg::subcommand::OptionGroup< Receiver >
OptionGroup() : vg::subcommand::OptionGroup< Receiver >
options_by_code : vg::ConfigurableParser
Order : vg::StreamSorter< Message >
order : ReferenceInterval, vg::DozeuInterface::OrderedGraph, vg::StreamSorter< Message >
order_length_repeat_hit_max : vg::MultipathMapper
order_of() : vg::IncrementalSubgraph
OrderedGraph() : vg::DozeuInterface::OrderedGraph
oriented_chain_id : vg::FragmentedHaplotypeVisit
oriented_distance() : vg::OrientedDistanceMeasurer, vg::PathOrientedDistanceMeasurer, vg::SnarlOrientedDistanceMeasurer
oriented_motif() : vg::SpliceStats
oriented_seed_t() : vg::ZipCodeTree::oriented_seed_t
OrientedDistanceClusterer() : vg::OrientedDistanceClusterer
origin_fragment : vg::RecombinatorHaplotype
original_index : vg::ZipCodeTree::distance_iterator
original_right_to_left : vg::ZipCodeTree::distance_iterator
OS : vg::Version
other : vg::algorithms::Edge
other_orientation_timeout : vg::RepresentativeTraversalFinder
other_ref_samples : vg::Deconstructor
out : vg::ProblemDumpExplainer, vg::TSVExplainer
out_buffer : vg::zstd_compress_buf, vg::zstd_decompress_buf
out_file : vg::HTSWriter
out_stream : vg::MCMCCaller
outfile : vg::Viz
output_fields : vg::ReadFilter< Read >
output_file : ChainsConfig
output_filepath() : vg::IndexingPlan
output_format : ChainsConfig
output_format_t : vg::MultipathAlignmentEmitter
output_in_progress : vg::Funnel
output_is_bgzf : vg::HTSWriter
output_name : MinimizerConfig
output_names : Vectorizer
output_png : vg::Viz
output_prefix : vg::IndexRegistry
output_svg : vg::Viz
output_tabbed : Vectorizer
output_variants : vg::VCFOutputCaller
output_vcf : vg::VCFOutputCaller
OUTPUT_VERSION : vg::StreamIndexBase
output_wabbit_map() : Vectorizer
over_directed_edge() : vg::Paths
over_edge() : vg::Paths
overflow() : vg::zstd_compress_buf
overlap : ReferenceInterval, vg::GaplessExtension, vg::IntervalUnion
OVERLAP_THRESHOLD : vg::GaplessExtender
overlay() : vg::Translator
overlay_node_translations() : vg::VG
overwrite_score : vg::ReadFilter< Read >
own_snarl_manager : vg::Masker