Collection of Public Single-Cell RNA-Seq Datasets

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Documentation for package ‘scRNAseq’ version 2.20.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

scRNAseq-package	Collection of Public Single-Cell RNA-Seq Datasets
allen	Collection of Public Single-Cell RNA-Seq Datasets
AztekinTailData	Obtain the Aztekin tail data
BacherTCellData	Obtain the Bacher T cell data
BachMammaryData	Obtain the Bach mammary data
BaronPancreasData	Obtain the Baron pancreas data
BhaduriOrganoidData	Obtain the Bhaduri cortical organoid data
BuettnerESCData	Obtain the Buettner ESC data
BunisHSPCData	Obtain the Bunis haematopoietic stem and progenitor cell data
CampbellBrainData	Obtain the Campbell brain data
ChenBrainData	Obtain the Chen brain data
countErccMolecules	Obtain ERCC molecule counts from concentrations
DarmanisBrainData	Obtain the Darmanis brain data
ERCCSpikeInConcentrations	Obtain ERCC concentrations
ErnstSpermatogenesisData	Obtain the Ernst spermatogenesis data
fetchDataset	Fetch a dataset from the gypsum backend
fetchLatestVersion	List available versions
fetchMetadata	Fetch a dataset from the gypsum backend
FletcherOlfactoryData	Obtain the Fletcher Olfactory data
fluidigm	Collection of Public Single-Cell RNA-Seq Datasets
GiladiHSCData	Obtain the Giladi HSC data
GrunHSCData	Obtain the Grun HSC data
GrunPancreasData	Obtain the Grun pancreas data
HeOrganAtlasData	Obtain the He organ atlas data
HermannSpermatogenesisData	Obtain the Hermann spermatogenesis data
HuCortexData	Obtain the Hu cortex data
JessaBrainData	Obtain the Jessa brain data
KolodziejczykESCData	Obtain the Kolodziejcyzk ESC data
KotliarovPBMCData	Obtain the Kotliarov CITE-seq data
LaMannoBrainData	Obtain the La Manno brain data
LawlorPancreasData	Obtain the Lawlor pancreas data
LedergorMyelomaData	Obtain the Ledergor Myeloma data
LengESCData	Obtain the Leng ESC data
listDatasets	List all available datasets
listVersions	List available versions
LunSpikeInData	Obtain the Lun spike-in data
MacoskoRetinaData	Obtain the Macosko retina data
MairPBMCData	Obtain the Mair CITE-seq data
MarquesBrainData	Obtain the Marques brain data
MessmerESCData	Obtain the Messmer ESC data
MuraroPancreasData	Obtain the Muraro pancreas data
NestorowaHSCData	Obtain the Nestorowa HSC data
NowakowskiCortexData	Obtain the Nowakowski cortex data
PaulHSCData	Obtain the Paul HSC data
polishDataset	Polish dataset for saving
PollenGliaData	Obtain the Pollen radial glia data
ReprocessedAllenData	Reprocessed single-cell data sets
ReprocessedFluidigmData	Reprocessed single-cell data sets
ReprocessedTh2Data	Reprocessed single-cell data sets
RichardTCellData	Obtain the Richard T cell data
RomanovBrainData	Obtain the Romanov brain data
saveDataset	Save a dataset to disk
scRNAseq	Collection of Public Single-Cell RNA-Seq Datasets
searchDatasets	Search dataset metadata
SegerstolpePancreasData	Obtain the Segerstolpe pancreas data
ShekharRetinaData	Obtain the Shekhar retina data
StoeckiusHashingData	Obtain the Stoeckius cell hashing data
surveyDatasets	Survey of dataset metadata
TasicBrainData	Obtain the Tasic brain data
th2	Collection of Public Single-Cell RNA-Seq Datasets
UsoskinBrainData	Obtain the Usoskin brain data
WuKidneyData	Obtain the Wu kidney data
XinPancreasData	Obtain the Xin pancreas data
ZeiselBrainData	Obtain the Zeisel brain data
ZeiselNervousData	Obtain the Zeisel nervous system data
ZhaoImmuneLiverData	Obtain the Zhao immune liver data
ZhongPrefrontalData	Obtain the Zhong prefrontal cortex data
ZilionisLungData	Obtain the Zilionis lung cancer data