Package org.jmol.modelset
Class HBond
java.lang.Object
org.jmol.util.Edge
org.jmol.modelset.Bond
org.jmol.modelset.HBond
- All Implemented Interfaces:
SimpleEdge
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Field Summary
Fields inherited from class org.jmol.modelset.Bond
atom1, atom2, colix, mad, myVisibilityFlag, shapeVisibilityFlags
Fields inherited from class org.jmol.util.Edge
BOND_AROMATIC, BOND_AROMATIC_DOUBLE, BOND_AROMATIC_MASK, BOND_AROMATIC_SINGLE, BOND_COVALENT_DOUBLE, BOND_COVALENT_MASK, BOND_COVALENT_QUADRUPLE, BOND_COVALENT_QUINTUPLE, BOND_COVALENT_sextuple, BOND_COVALENT_SINGLE, BOND_COVALENT_TRIPLE, BOND_H_CALC, BOND_H_CALC_MASK, BOND_H_MINUS_3, BOND_H_MINUS_4, BOND_H_NUCLEOTIDE, BOND_H_PLUS_2, BOND_H_PLUS_3, BOND_H_PLUS_4, BOND_H_PLUS_5, BOND_H_REGULAR, BOND_HBOND_SHIFT, BOND_HYDROGEN_MASK, BOND_NEW, BOND_ORDER_ANY, BOND_ORDER_NULL, BOND_ORDER_UNSPECIFIED, BOND_PARTIAL_MASK, BOND_PARTIAL01, BOND_PARTIAL12, BOND_PARTIAL23, BOND_PARTIAL32, BOND_PYMOL_MULT, BOND_PYMOL_NOMULT, BOND_RENDER_MASK, BOND_RENDER_SINGLE, BOND_STEREO_EITHER, BOND_STEREO_FAR, BOND_STEREO_MASK, BOND_STEREO_NEAR, BOND_STRUT, BOND_SULFUR_MASK, index, order, TYPE_ATROPISOMER, TYPE_ATROPISOMER_REV
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionstatic final int
calcEnergy
(double distAH, double distCH, double distCD, double distAD) float
Methods inherited from class org.jmol.modelset.Bond
getAtom, getAtomIndex1, getAtomIndex2, getCIPChirality, getCovalentOrder, getIdentity, getOtherAtom, getOtherNode, getValence, is, isCovalent, isCovalentNotPartial0, isHydrogen, isPartial, setAtropisomerOptions, setCIPChirality, setMad, setOrder, setTranslucent, toString
Methods inherited from class org.jmol.util.Edge
getArgbHbondType, getAtropismNode, getAtropismOrder, getAtropismOrder12, getBondOrderFromFloat, getBondOrderFromString, getBondOrderNameFromOrder, getBondOrderNumberFromOrder, getBondType, getCmlBondOrder, getCovalentBondOrder, getFloatEncodedInt, getPartialBondDotted, getPartialBondOrder, getPartialBondOrderFromFloatEncodedInt, isAtropism, isOrderH